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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST002772
species: Triphysaria pusilla
miRNA family: MIR397
source: miRNEST

Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGTTGAGTGCGGCGTTGATG

miRNA*
 GACGGCGTCGATTTCGACGACG

mismatches: 3
bulges: 1
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pre-miRNA
 GCTTTGTGTAGACGGCGTCGATTTCGACGACGGTTAGAGTGTGGTTGGCTATGGCGAAGAAGAGCTCGTCGTTGAGTGCGGCGTTGATGATTCTTAGTA

dot-bracket secondary structure
(((.....((..((((((((..(((((((((((((....(((.((.....)).)))......))).))))))))))..)))))))).))......))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q5N9X2|LAC4_ORYSJ: 0.000000005

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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