ABOUT THIS RECORDspecies: Triticum turgidum subsp. durum
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Triticum turgidum subsp. durum Triticum turgidum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTCTCAAAATAT miRNA* ATTTTGGGACGGAGGGAGTAT mismatches: 0 bulges: 0 |
pre-miRNA
ATGTGTATGACAGCTACTCCCTCCGTCTCAAAATATAAGAGCGTTTTTGGCACTACACTAGTGTAAAAAATGCTCTTATATTTTGGGACGGAGGGAGTAT
GTTTGTTTGGAG
dot-bracket secondary structure
........(((((.((((((((((((((((((((((((((((((((((.((((((...)))))).)))))))))))))))))))))))))))))))))).
..))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGTGTATGACAGCTACTCCCTCCGTCTCAAAATATAAGAGCGTTTTTGGCACTACACTAGTGTAAAAAATGCTCTTATATTTTGGGACGGAGGGAGTAT
GTTTGTTTGGAG
dot-bracket secondary structure
........(((((.((((((((((((((((((((((((((((((((((.((((((...)))))).)))))))))))))))))))))))))))))))))).
..))))).....
SIMILARITIES| miRBase tae-MIR1120: 6e-18 PMRD tae-miR1120: 6e-18 microPC miR1439: 1e-43 | UniProt no hits RFAM MIR1122: 2e-27 | most similar mature miRNAs |
Identical with: miR1439 from microPC (MNEST046836) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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