miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Vitis shuttleworthii, Vitis vinifera



ABOUT THIS RECORD

ID: MNEST002815
species: Vitis shuttleworthii
miRNA family: MIRf1052
source: miRNEST

Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAAGGGGGGAGAGCTGTTGT

miRNA*
 TAGCCGTTAGCCTTCCGTTTCC

mismatches: 4
bulges: 1
View larger
pre-miRNA
 CTAATCGCCCGATCCGTCTAACTAGCCGTTAGCCTTCCGTTTCCCGCTGTTGATCTACCGGCTTCGATTTGTAACCGTTGGATCCGTCATTTGGACCAGC
GTTCCGCATTCTTTTTGACATAGTTTTTAATTTTTTTTTTAAATTATTTATTCGACCGTTACTTTGCCGGAGTTGGCCGGAAATGGCTGCAGCGGTGGAA
TCGGAGAATAAAGTTGAAGAAAAGAAGTCGGAGAAGGGGGGAGAGCTGTTGTTATGTGGGTCAACGTGTTG

dot-bracket secondary structure
..........(((((((.((((.(((.(((..((((((.(((((.(((...((((((.(((...(.....)...))).)))))).((((...(((...((
(...)))..)))...)))).((.....)).((((((((((((....(((((((..(((....(((((((....((((((....))))))...))))))).
.))).))))))).))))))))))))))).))))).))))))..))).))))))).))))))).........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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