ABOUT THIS RECORDspecies: Vitis shuttleworthii
miRNA family: MIRf1133
source: miRNEST
Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAAATCATCCCCCATGCTGT miRNA* TGCTCAGGGTGATGAGTTTGGT mismatches: 5 bulges: 1 |
pre-miRNA
ACTATCCGAGACAAAATCATCCCCCATGCTGTTTCATGGTTCACAGGGGAGGCTGCTCAGGGTGATGAGTTTGGTGACATGGA
dot-bracket secondary structure
....((((...((((.(((((.(((..((.(((((.((.....))...))))).))...))).))))).))))......))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACTATCCGAGACAAAATCATCCCCCATGCTGTTTCATGGTTCACAGGGGAGGCTGCTCAGGGTGATGAGTTTGGTGACATGGA
dot-bracket secondary structure
....((((...((((.(((((.(((..((.(((((.((.....))...))))).))...))).))))).))))......))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11461-akr: 0.00000000000007 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
