ABOUT THIS RECORDspecies: Vitis shuttleworthii
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
TATGGTTCTTACGGTGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATGGGTTG
CTGAGCGAATTCCGATCCCGCCTTGCATCAACTGAATCGGAGACGGCGGTGATGTGATG
dot-bracket secondary structure
........((((.((.((((((.(((((.((((((((((.(((((...((.(((((.((((((((...)))))).))...(((((((((.....))))))
))).))))).))...))))).)))))))))).))))).)))))).)).)))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATGGTTCTTACGGTGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATGGGTTG
CTGAGCGAATTCCGATCCCGCCTTGCATCAACTGAATCGGAGACGGCGGTGATGTGATG
dot-bracket secondary structure
........((((.((.((((((.(((((.((((((((((.(((((...((.(((((.((((((((...)))))).))...(((((((((.....))))))
))).))))).))...))))).)))))))))).))))).)))))).)).)))).......
SIMILARITIES| miRBase vvi-MIR168: 2e-68 PMRD vvi-miR168: 2e-68 microPC miR168: 2e-55 | UniProt no hits RFAM MIR168: 4e-76 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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