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Species belonging to selected taxon:

Vitis shuttleworthii



ABOUT THIS RECORD

ID: MNEST002820
species: Vitis shuttleworthii
miRNA family: miR172c
source: miRNEST

Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAGCATCATCAAGATTCACA

miRNA*
 GGAATCTTGATGATGCTGCAG

mismatches: 2
bulges: 0
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pre-miRNA
 TCAAGACACCAGTCACTGTTTGCGGATGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTTTGTGGTCCCTTCCA
CACTCCGATGGCTCTTTGATATGGGAATCTTGATGATGCTGCAGCGGCAATAAATGGCTAATTTTTAT

dot-bracket secondary structure
..........(((((....((((...((.((((((((((((((((.((.((...((((.(((...((.((((..((.((.((((.....)))))).))..
)))).)).))).))))..)).)).)))))))))))))))).))...))))....))))).........


SIMILARITIES
miRBase vvi-MIR172c: 3e-67

PMRD vvi-miR172c: 3e-67

microPC miR172: 0.000008		UniProt no hits

RFAM mir-172: 3e-67		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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