ABOUT THIS RECORDspecies: Macaca nemestrina
miRNA family: mir-99
source: miRBase, original name: mne-mir-99a (MI0002707)
Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCCGTAGATCCGATCTTGTG miRNA* CAAGCTCGCTTCTATGGGTCTG mismatches: 4 bulges: 0 |
pre-miRNA
GCCCATTGGCATAAACCCGTAGATCCGATCTTGTGGTGAAGTGGACCGCACAAGCTCGCTTCTATGGGTCTGTGTCAGTGTG
dot-bracket secondary structure
)..((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).))))))))))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
GCCCATTGGCATAAACCCGTAGATCCGATCTTGTGGTGAAGTGGACCGCACAAGCTCGCTTCTATGGGTCTGTGTCAGTGTG
dot-bracket secondary structure
)..((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).))))))))))..
SIMILARITIES| miRBase lla-mir-99a: 9.0E-41 PMRD no hits microPC no hits | UniProt no hits RFAM 0mir-10: 3.0E-25 |
Identical with: ppa-mir-99a from miRBase (MNEST030079), mml-mir-99a from miRBase , ptr-mir-99a from miRBase , ssc-mir-99a from miRBase , lla-mir-99a from miRBase , hsa-mir-99a from miRBase , ggo-mir-99a from miRBase , bta-mir-99a from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"
