ABOUT THIS RECORDspecies: Zamia vazquezii
miRNA family: MIR535
source: miRNEST
Taxonomy by NCBI:
Zamia vazquezii Zamia Zamiaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACGACGAGAGAGAGCACGC miRNA* GTGTTCTCGTCCCGTTGTCAGC mismatches: 1 bulges: 1 |
pre-miRNA
TACCGCGCTGTTGACGACGAGAGAGAGCACGCTTGTAGACAATAATATGATTTTGGACGGTTATTACAACGTATTTCTGTGTACATGCGTGTTCTCGTCC
CGTTGTCAGCAGTAATGA
dot-bracket secondary structure
......(((((((((((((.((((((((((((.((((.(((..((((((...(((...........)))))))))..))).)))).)))))))))).)).
))))))))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACCGCGCTGTTGACGACGAGAGAGAGCACGCTTGTAGACAATAATATGATTTTGGACGGTTATTACAACGTATTTCTGTGTACATGCGTGTTCTCGTCC
CGTTGTCAGCAGTAATGA
dot-bracket secondary structure
......(((((((((((((.((((((((((((.((((.(((..((((((...(((...........)))))))))..))).)))).)))))))))).)).
))))))))))))).....
SIMILARITIES| miRBase rco-MIR535: 0.000001 PMRD rco-miR535: 0.000001 microPC miR535: 4e-50 | UniProt no hits RFAM MIR535: 0.00003 | most similar mature miRNAs |
Identical with: miR535 from microPC (MNEST044879) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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