ABOUT THIS RECORDspecies: Homo sapiens
source: miRBase, original name: hsa-mir-499a (MI0017396)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACATCACTGCAAGTCTTAACA miRNA* CACAGACTTGCTGTGATGTTCA mismatches: 6 bulges: 0 |
pre-miRNA
CGGAAGCAGCACAGACTTGCTGTGATGTTCACGTGGAGAGGAGTTAAACATCACTGCAAGTCTTAACAGCCGCC
dot-bracket secondary structure
)....((.((..((((((((.((((((((.((..........))..)))))))).)))))))).....)).)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C, Cancer Res. 71:78-86(2011)., "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene"
CGGAAGCAGCACAGACTTGCTGTGATGTTCACGTGGAGAGGAGTTAAACATCACTGCAAGTCTTAACAGCCGCC
dot-bracket secondary structure
)....((.((..((((((((.((((((((.((..........))..)))))))).)))))))).....)).)).
SIMILARITIES| miRBase eca-mir-499: 5.0E-36 PMRD no hits microPC no hits | UniProt no hits RFAM 9mir-499: 1.0E-30 |
Identical with: hsa-mir-499 from miRBase (MNEST028690), eca-mir-499 from miRBase , cfa-mir-499 from miRBase |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C, Cancer Res. 71:78-86(2011)., "Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene"
