miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002873
species: Carica papaya
miRNA family: MIRf493
source: miRNEST

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTCGGACCAGGCTTCATTCCC

miRNA*
 GAATGTTGTTTGGCTCGAGGT

mismatches: 3
bulges: 0
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pre-miRNA
 TTCTGAGAGGTGGAGGTTAATGGGAATGTTGTTTGGCTCGAGGTCATCTGTGATAACCTCTGAAATTTTCTTAGGGGCCTTTTTACTTTCCCGGAAAATT
TCTGCATCTACATACCTCTAGTTGATCTCGGACCAGGCTTCATTCCCGTCAACCGAACACTTCTTTC

dot-bracket secondary structure
....((((((((..((((.(((((((((..((((((.(((((((((.(((...........((((((((((..((((...........))))))))))))
))................))).))))))))).))))))..))))))))).))))...))))))))..


SIMILARITIES
miRBase csi-MIR166b: 0.000000000002

PMRD zma-miR166n: 0.00000003

microPC miR166: 0.0000005		UniProt no hits

RFAM mir-166: 9e-71		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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