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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002876
species: Carica papaya
miRNA family: MIR390
source: miRNEST

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGCTCAGGAGGGATAGCGCC

miRNA*
 CGCTATCCATCCTGAGTTTCA

mismatches: 2
bulges: 0
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pre-miRNA
 AAAAGTAGAGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGCGGGTCTTGAATCTTGATCTTCATTTGCGCTATCCATCCTGAGTTTCACTGCTT
CTTCTTACTCTC

dot-bracket secondary structure
.......((((((((...((.((((((((((.(((((((((.((((.(((((.........)))))))))..))))))))).)))))))))).))...))
))))))......


SIMILARITIES
miRBase csi-MIR390: 1e-16

PMRD ghr-miR390b: 0.00000000000002

microPC miR390: 3e-35		UniProt no hits

RFAM MIR390: 4e-50		most similar mature miRNAs

Identical with: miR390 from microPC (MNEST045151)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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