ABOUT THIS RECORDspecies: Carica papaya
miRNA family: MIR390
source: miRNEST
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATCCTGAGTTTCA mismatches: 2 bulges: 0 |
pre-miRNA
AAAAGTAGAGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGCGGGTCTTGAATCTTGATCTTCATTTGCGCTATCCATCCTGAGTTTCACTGCTT
CTTCTTACTCTC
dot-bracket secondary structure
.......((((((((...((.((((((((((.(((((((((.((((.(((((.........)))))))))..))))))))).)))))))))).))...))
))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAAGTAGAGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGCGGGTCTTGAATCTTGATCTTCATTTGCGCTATCCATCCTGAGTTTCACTGCTT
CTTCTTACTCTC
dot-bracket secondary structure
.......((((((((...((.((((((((((.(((((((((.((((.(((((.........)))))))))..))))))))).)))))))))).))...))
))))))......
SIMILARITIES| miRBase csi-MIR390: 1e-16 PMRD ghr-miR390b: 0.00000000000002 microPC miR390: 3e-35 | UniProt no hits RFAM MIR390: 4e-50 | most similar mature miRNAs |
Identical with: miR390 from microPC (MNEST045151) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
