ABOUT THIS RECORDspecies: Homo sapiens
miRNA family: mir-548
source: miRBase, original name: hsa-mir-548aa-1 (MI0016689)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAAACCACAATTACTTTTGCACCA miRNA* GTGCAAAAGAAACTGTGGTTTTTGC mismatches: 2 bulges: 0 |
pre-miRNA
CTTTATTAGTCTGGTGCAAAAGAAACTGTGGTTTTTGCCATTACTTTTACAGGCAAAAACCACAATTACTTTTGCACCAACCTAATATAACTTGTTT
dot-bracket secondary structure
...((((((..(((((((((((.((.(((((((((((((............))))))))))))).)).)))))))))))..))))))..........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Witten D, Tibshirani R, Gu SG, Fire A, Lui WO, BMC Biol. 8:58(2010)., "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls"
CTTTATTAGTCTGGTGCAAAAGAAACTGTGGTTTTTGCCATTACTTTTACAGGCAAAAACCACAATTACTTTTGCACCAACCTAATATAACTTGTTT
dot-bracket secondary structure
...((((((..(((((((((((.((.(((((((((((((............))))))))))))).)).)))))))))))..))))))..........
SIMILARITIES| miRBase hsa-mir-548d-1: 3e-50 PMRD no hits microPC no hits | UniProt no hits RFAM mir-548: 1e-31 |
Identical with: hsa-mir-548d-1 from miRBase (MNEST028821) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Witten D, Tibshirani R, Gu SG, Fire A, Lui WO, BMC Biol. 8:58(2010)., "Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls"
