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Species belonging to selected taxon:
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Rattus norvegicus
,
Canis lupus familiaris
,
Ovis aries
,
Macaca fascicularis
,
Trichosurus vulpecula
,
Papio anubis
,
Homo sapiens
,
Peromyscus maniculatus bairdii
,
Pongo abelii
,
Ursus americanus
,
Equus caballus
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Cavia porcellus
,
Bos indicus
,
Bos sp.
,
Macropus eugenii
,
Peromyscus polionotus subgriseus
,
Capra hircus
,
Pan troglodytes verus
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST028826
species:
Homo sapiens
miRNA family:
mir-548
source:
miRBase, original name:
hsa-mir-548f-2
(
MI0006375
)
Taxonomy by NCBI:
Homo sapiens
Homo
Homininae
Hominidae
Hominoidea
Catarrhini
Simiiformes
Haplorrhini
Primates
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAAAACTGTAATTACTTTT
miRNA*
ACATAATTGCAGTTTTTAT
mismatches:
2
bulges:
0
View larger
pre-miRNA
TAATAACTATTAGGTTGGTGCGA
ACATAATTGCAGTTTTTAT
CATTACTTTTAATGGC
AAAAACTGTAATTACTTTT
GCACCAACCTAATATTTTAGT
dot-bracket secondary structure
.......((((((((((((((((
(..((((((((((((((..
(((((....)))))..
))))))))))))))..)))
)))))))))))))).......
SIMILARITIES
miRBase
hsa-mir-548aj-2
:
9e-23
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-548: 2e-18
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA,
Genome Res. 18:610-621(2008).
,
"Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"