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Species belonging to selected taxon:
Homo sapiens
,
Pongo abelii
,
Pan troglodytes verus
ABOUT THIS RECORD
ID:
MNEST028827
species:
Homo sapiens
miRNA family:
mir-548
source:
miRBase, original name:
hsa-mir-548f-3
(
MI0006376
)
Taxonomy by NCBI:
Homo sapiens
Homo
Homininae
Hominidae
Hominoidea
Catarrhini
Simiiformes
Haplorrhini
Primates
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAAAACTGTAATTACTTTT
miRNA*
ACCTAATTGCAATTTTTGC
mismatches:
3
bulges:
0
View larger
pre-miRNA
ATTAGGTTGGTGCAA
ACCTAATTGCAATTTTTGC
AGTTTTTTTAAGTAATTGC
AAAAACTGTAATTACTTTT
GCACCAACCTAATAC
dot-bracket secondary structure
(((((((((((((((
(..((((((((.(((((((
((((.........))))))
))))).))))))))..)))
)))))))))))))..
SIMILARITIES
miRBase
ptr-mir-548f-2
:
4e-31
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-548: 0.00000000008
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA,
Genome Res. 18:610-621(2008).
,
"Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells"