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Species belonging to selected taxon:
Ipomoea batatas
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST002885
species:
Capsicum annuum
miRNA family:
MIR1122
source:
miRNEST
Taxonomy by NCBI:
Capsicum annuum
Capsicum
Capsiceae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTCCCAAATTA
miRNA*
TTTTTGGACGAGGAAGTATT
mismatches:
3
bulges:
1
View larger
pre-miRNA
ATGTATTTAC
TACTCCCTCCGTCCCAAATTA
TCCGTCTCAAATTTTCTAATTTAATTTCTCGTTTTACTTGTCTTTTTTCATTAATCAAGAAGAAATAAT
TTTTTTTCATGTTTTATCCTTTGCATTAATTACTTTTACTTCAAATTAAAATATAAACATCATTTAATAGGGGTACTATGTTAAATTAATCATGTTATTA
ATTATTTTTCTTAATTAATGTGTCATCTCAATTTGGGACGAATA
TTTTTGGACGAGGAAGTATT
TGTGAAT
dot-bracket secondary structure
....((((((
((((.((((.((((.(((.((
(.((((((((((..........................((........(((((((.(((((.(((((((
(......((((..(((...((.((((....((((((((.............................))))))))..)))).))..))).)))).....)
)))))))))))).)))))))........)))))))))))).)))
.))).)))))))).))))..
.))))))
SIMILARITIES
miRBase
ssp-MIR1128
:
0.0002
PMRD
osa-miRf11705-akr
:
0.0009
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record