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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002904
species: Carthamus tinctorius
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCATCATCT

miRNA*
 TATGAAGATGCTGGTGATT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 TTGCTACGTTCTCTGATCTTCATCATCATCATCATCATCTTCATCCTCGTGTTTTTCGTACGTCTCCTGCAATTGCTTAGTGGGAGAAACATCTTGCAAG
CCAAGGCATAGTGAGAATGTCTGATCAAATAGCCAAAGGTCAGGAGTTCGAGAAGAAAGCTGAGAAGAAGCTCAATGGTTGGGGATTCTTTGGATCCAAG
TATGAAGATGCTGGTGATTTATATGAAAAAGCTGC

dot-bracket secondary structure
..(((...(((..(((...((((((.((((.((((...(((.((((..((.(((((((.((.((((((((.........)))))))).(((((((((..(
(....))...))))).))))((((((...........))))))..)).)))))))...))...((((((.(((((...)))))..))))))))))..)))
.)))).)))).)))))).)))...)))..)))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P93798|SNAA_VITVI: 0.00000000003

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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