miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST029042
species: Homo sapiens
miRNA family: mir-941
source: miRBase, original name: hsa-mir-941-3 (MI0005765)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CACCCGGCTGTGTGCACATGTGC

miRNA*
 ACATGTGCCCAGGGCCCGGGACAGCG

mismatches: 3
bulges: 3
View larger
pre-miRNA
 CACGGAAGAGGACGCACCCGGCTGTGTGCACATGTGCCCAGGGCCCGGGACAGCGCCACGGAAGAGGACGCACCCGGCTGTGTGCACATGTGCCCAGGGC
CCGGGACAGCGCCATGG

dot-bracket secondary structure
..(....).((.(((.(((((((.((.((((((((((.((.((((.(((...(((((.(....).)).))).))))))).)).)))))))))).)).)).
)))))...)))))....


SIMILARITIES
miRBase hsa-mir-941-2: 3e-60

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-941: 2e-39

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, SOLiD

references
[1] Goff LA, Davila J, Swerdel MR, Moore JC, Cohen RI, Wu H, Sun YE, Hart RP, PLoS One. 4:e7192(2009)., "Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors"
[2] Lui WO, Pourmand N, Patterson BK, Fire A, Cancer Res. 67:6031-6043(2007)., "Patterns of known and novel small RNAs in human cervical cancer"



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