miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Bos indicus, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST029197
species: Homo sapiens
miRNA family: mir-1915
source: miRBase, original name: hsa-mir-1915 (MI0008336)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCCCAGGGCGACGCGGCGGG

miRNA*
 TGCCTTGCTGCCCGGGCC

mismatches: 2
bulges: 2
View larger
pre-miRNA
 TGAGAGGCCGCACCTTGCCTTGCTGCCCGGGCCGTGCACCCGTGGGCCCCAGGGCGACGCGGCGGGGGCGGCCCTAGCGA

dot-bracket secondary structure
..((.((((((.(((((((.((.((((((((((.(((....))))))))..))))).)).))))))))))))))).....


SIMILARITIES
miRBase ppy-mir-1915: 2e-35

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Bar M, Wyman SK, Fritz BR, Qi J, Garg KS, Parkin RK, Kroh EM, Bendoraite A, Mitchell PS, Nelson AM, Ruzzo WL, Ware C, Radich JP, Gentleman R, Ruohola-Baker H, Tewari M, Stem Cells. 26:2496-2505(2008)., "MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries"



Liczniki na strone;