miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002956
species: Centaurea solstitialis
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GGTCATCTTGCAGCTTCAAT

mismatches: 1
bulges: 1
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pre-miRNA
 ATATATGTTGGTCTGAGAGATTGAAGCTGCCAGCATGATCTGGTGTTGTAAACCGGTACCTCTGTGTATGTATGTGTGTGTTTAATTTTCTTGCGTGTTG
TAAACCAGTAGTAACTATAAGGGGGTATGGATAGAAAACTCCTTAATTAACGGTTAATCTTTGTATGTGTTTTCTGGTGTGTGTGTGTGTGTGTGTGTGC
GCGTGTAAGTGTTTTAAGAGTAGCTAGGTGAAGAGAGGTTAATAAACCAGGTCATCTTGCAGCTTCAATCACTCATACCCAACAGTT

dot-bracket secondary structure
.....(((((((.((((.((((((((((((.((.((((((((((.((((.((((.....((((...(((.((.((.....(((((....((((((.....
((.(((((....(((.((.(((((((...........))))))).))..(((..(((...)))..))))))..))))).)).((((............))
)).))))))....)))))....)))).))).)))).)))).)))))))))))))))).)))))))))))).)))).).))))))...


SIMILARITIES
miRBase csi-MIR167c: 0.0000000003

PMRD gma-miR167o: 0.000000001

microPC miR167: 0.000004		UniProt no hits

RFAM MIR167_1: 0.000000001		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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