ABOUT THIS RECORDspecies: Homo sapiens
source: miRBase, original name: hsa-mir-4459 (MI0016805)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCAGGAGGCGGAGGAGGTGGAG miRNA* TGGCACTGACTCCAGCCTGGGG mismatches: 6 bulges: 2 |
pre-miRNA
ACCCAGGAGGCGGAGGAGGTGGAGGTTGCAGTGAGCCAAGATCGTGGCACTGACTCCAGCCTGGGG
dot-bracket secondary structure
.((((((....((((..((((..((((((.....))...))))....))))..))))..)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Yan Au W, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill , Blood. 116:e118-e127(2010)., "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs"
ACCCAGGAGGCGGAGGAGGTGGAGGTTGCAGTGAGCCAAGATCGTGGCACTGACTCCAGCCTGGGG
dot-bracket secondary structure
.((((((....((((..((((..((((((.....))...))))....))))..))))..)))))).
SIMILARITIES| miRBase ppy-mir-1273: 0.00000000001 PMRD ptc-miRf12524-akr: 0.0007 microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.000000000000004 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Yan Au W, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill , Blood. 116:e118-e127(2010)., "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs"
