miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002981
species: Cichorium endivia
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGAGAGGGAGCAT

miRNA*
 GCTCTCTTTCTATCTGTCAGCT

mismatches: 0
bulges: 1
View larger
pre-miRNA
 TCAACATTAAGTTGACAGAAGAGAGGGAGCATTCATAGTTCTTGCATGAAAGAAATCATGCTTGAATTTATGTATGCTCTCTTTCTATCTGTCAGCTTTT
TTCCC

dot-bracket secondary structure
........((((((((((((((((((((((((.((((((((..((((((......))))))..))).))))).))))))))))))).)))))))))))..
.....


SIMILARITIES
miRBase vvi-MIR156a: 0.00008

PMRD vvi-miR156a: 0.00008

microPC miR156: 2e-42		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST045293)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;