miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Danio rerio, Ciona intestinalis, Rattus norvegicus, Xenopus laevis, Oryzias latipes, Gallus gallus, Salmo salar, Canis lupus familiaris, Ictalurus punctatus, Ovis aries, Branchiostoma floridae, Oncorhynchus mykiss, Gasterosteus aculeatus, Pimephales promelas, Gadus morhua, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Ictalurus furcatus, Homo sapiens, Petromyzon marinus, Oreochromis niloticus, Molgula tectiformis, Taeniopygia guttata, Ciona savignyi, Peromyscus maniculatus bairdii, Fundulus heteroclitus, Sparus aurata, Halocynthia roretzi, Dicentrarchus labrax, Pongo abelii, Ursus americanus, Equus caballus, Dissostichus mawsoni, Osmerus mordax, Oryctolagus cuniculus, Macaca nemestrina, Anoplopoma fimbria, Cyprinus carpio, Esox lucius, Squalus acanthias, Leucoraja erinacea, Rana catesbeiana, Takifugu rubripes, Cynops pyrrhogaster, Eptatretus burgeri, Sebastes caurinus, Misgurnus anguillicaudatus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Rutilus rutilus, Meleagris gallopavo, Lonchura striata domestica, Poecilia reticulata, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Oncorhynchus tshawytscha, Capra hircus, Paralichthys olivaceus, Psetta maxima, Pan troglodytes verus, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Torpedo californica, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST030034
species: Homo sapiens
source: miRBase, original name: hsa-mir-5095 (MI0018001)

Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTACAGGCGTGAACCACCGCG

miRNA*
 CGGTGGCTCACGCCTGTAATC

mismatches: 2
bulges: 0
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pre-miRNA
 CTGGGATTACAGGCGTGAACCACCGCGCCCGGCCTAACTTTTAAGAAACGTCGGCCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGC

dot-bracket secondary structure
((((((((((((((((((.(((((((.(((((.(..(((((....))).))..).))))).))))))).)))))))))))))))))).


SIMILARITIES
miRBase hsa-mir-3159: 0.000001

PMRD ptc-miRf12412-akr: 0.00000002

microPC no hits		UniProt no hits

RFAM Metazoa_SRP: 0.00000000008

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR

references
[1] Reshmi G, Chandra SS, Babu VJ, Babu PS, Santhi WS, Ramachandran S, Lakshmi S, Nair AS, Pillai MR, Genomics. [Epub prior to print](2011)., "Identification and analysis of novel microRNAs from Fragile Sites of Human Cervical Cancer: Computational and Experimental Approach"



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