ABOUT THIS RECORDspecies: Homo sapiens
source: miRBase, original name: hsa-mir-5095 (MI0018001)
Taxonomy by NCBI:
Homo sapiens Homo Homininae Hominidae Hominoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACAGGCGTGAACCACCGCG miRNA* CGGTGGCTCACGCCTGTAATC mismatches: 2 bulges: 0 |
pre-miRNA
CTGGGATTACAGGCGTGAACCACCGCGCCCGGCCTAACTTTTAAGAAACGTCGGCCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGC
dot-bracket secondary structure
((((((((((((((((((.(((((((.(((((.(..(((((....))).))..).))))).))))))).)))))))))))))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Reshmi G, Chandra SS, Babu VJ, Babu PS, Santhi WS, Ramachandran S, Lakshmi S, Nair AS, Pillai MR, Genomics. [Epub prior to print](2011)., "Identification and analysis of novel microRNAs from Fragile Sites of Human Cervical Cancer: Computational and Experimental Approach"
CTGGGATTACAGGCGTGAACCACCGCGCCCGGCCTAACTTTTAAGAAACGTCGGCCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGC
dot-bracket secondary structure
((((((((((((((((((.(((((((.(((((.(..(((((....))).))..).))))).))))))).)))))))))))))))))).
SIMILARITIES| miRBase hsa-mir-3159: 0.000001 PMRD ptc-miRf12412-akr: 0.00000002 microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.00000000008 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RTPCR
references
[1] Reshmi G, Chandra SS, Babu VJ, Babu PS, Santhi WS, Ramachandran S, Lakshmi S, Nair AS, Pillai MR, Genomics. [Epub prior to print](2011)., "Identification and analysis of novel microRNAs from Fragile Sites of Human Cervical Cancer: Computational and Experimental Approach"
