ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf1178
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCTCCTTCGCCATCGCCATC miRNA* TGGTGAAGTGAGTGGGGGT mismatches: 3 bulges: 2 |
pre-miRNA
ACATTCTCGACCCCTCCTTCGCCATCGCCATCTCCACCGCCTCCACTAGCTACAGTGGACGAAGCGGCATCATGTAATGGCATCAATAAGCGTGGCTCAT
CAGCAATGGGCTCTGGGAAGCCTCCAAGAGCTGGTGAAGTGAGTGGGGGTCACGGCCA
dot-bracket secondary structure
........(((((((..(((((..((((((.(((..((((.((((((......))))))....)))).....((....(((.((......((.(((((((
.....))))))).)).)).)))..)).))).)))))).))))).))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACATTCTCGACCCCTCCTTCGCCATCGCCATCTCCACCGCCTCCACTAGCTACAGTGGACGAAGCGGCATCATGTAATGGCATCAATAAGCGTGGCTCAT
CAGCAATGGGCTCTGGGAAGCCTCCAAGAGCTGGTGAAGTGAGTGGGGGTCACGGCCA
dot-bracket secondary structure
........(((((((..(((((..((((((.(((..((((.((((((......))))))....)))).....((....(((.((......((.(((((((
.....))))))).)).)).)))..)).))).)))))).))))).))))))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
