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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST003035
species: Brachypodium distachyon
miRNA family: MIR1122
source: miRNEST

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGATACATCCATATTTGGGC

miRNA*
 CGAAATATTACATGTATCTAGA

mismatches: 3
bulges: 1
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pre-miRNA
 CTAAATTGTTGTCGAAATATTACATGTATCTAGACGCTTTTTAAGAATAGATACATCCATATTTGGGCAAATTTGAG

dot-bracket secondary structure
.((((((..((((.((((((...(((((((((....(((...)))..)))))))))..)))))).))))))))))..


SIMILARITIES
miRBase bdi-MIR5183: 1e-21

PMRD bdi-miR1135: 3e-19

microPC miR1135: 0.00005		UniProt no hits

RFAM MIR1122: 9e-35		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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