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Species belonging to selected taxon:
Brachypodium distachyon
ABOUT THIS RECORD
ID:
MNEST003049
species:
Brachypodium distachyon
miRNA family:
MIR1135
source:
miRNEST
Taxonomy by NCBI:
Brachypodium distachyon
Brachypodium
Brachypodieae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGAGACAAGTAATTCCGATC
miRNA*
TCGGAATTACTTGTTGAAATA
mismatches:
5
bulges:
0
View larger
pre-miRNA
AACCTGAAAAGAAAAACAGCTACTCACTCCAG
TCGGAATTACTTGTTGAAATA
TTACGTGTATCTAGACGGTTTTTTACACATAGATACGTCCGTATTTG
GGCAAAT
TTGAGACAAGTAATTCCGATC
GGAGGGAGCAGCATATTTTTTTCCTTATG
dot-bracket secondary structure
.....((((((((.....(((.(((.((((.(
(((((((((((((((....((
.((((((((((((....((.....))...))))))))..))))..))
.......
....)))))))))))))))).
)))).))).)))...))))))))......
SIMILARITIES
miRBase
bdi-MIR1135
:
3e-30
PMRD
bdi-miR1135
:
3e-30
microPC
miR1127
:
0.0001
UniProt
no hits
RFAM
MIR1122: 1e-29
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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