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Species belonging to selected taxon:
Brachypodium distachyon
ABOUT THIS RECORD
ID:
MNEST003109
species:
Brachypodium distachyon
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Brachypodium distachyon
Brachypodium
Brachypodieae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATACTCCTTCCGTCCCATATT
miRNA*
TGTGAAACGGAGGGAGTAGCT
mismatches:
3
bulges:
0
View larger
pre-miRNA
TAACTGTCTAA
ATACTCCTTCCGTCCCATATT
AAGTGTCGAAATATTGCATGTATCTAGACGTATTTTAATATATAGATACGTCCATATTTAGACAAATT
CGAGTCACTTAA
TGTGAAACGGAGGGAGTAGCT
TTTAATCT
dot-bracket secondary structure
...........
.((((((((((((..((((((
((((((((((.((.((.(((((((((...((((....)))).))))))))).))....))......))
)))..)))))))
))))..))))))))))))...
........
SIMILARITIES
miRBase
bdi-MIR5183
:
0.00000000003
PMRD
bdi-miR1135
:
0.00003
microPC
miR1135
:
0.00003
UniProt
no hits
RFAM
MIR1122: 5e-41
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record