miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST003147
species: Helianthus annuus
miRNA family: miR3441.2
source: miRNEST

Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAAGAAAAAGAAGTCGTTGA

miRNA*
 AACCACTTTTTTTTGTTCTTT

mismatches: 3
bulges: 0
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pre-miRNA
 GTCATATCCAGTAACCACTTTTTTTTGTTCTTTATTCCATCTTTCTCCTCTCATCATGTCTAACGAAGGAGTTTACCACGAAGCCCCGAAAATTCAAGAG
CCCTGCTAAATCTACCACAACTACTGTCAAGGTTGAGCCTGAGGTCGTAGAACATTCTCATCGTGGGATGCTTGGCTTCTTGAAGAATGACTCATTAGGA
CAACAAGTGTGACGATGCCGTAATCTCATCCCACTTTGAACAGAACGATCAAGTGACTGAACCCCAACCTGAGTAGAAGAAAGAAAGCTTGCTGGAGAAA
TTTCACCGATCTAATAGCAGTTCCCGCAGTTCTAGTGATGAGGAGTGCGATTATGGTGAGAAGCAGAAGAAAAAGAAGTCGTTGAAGGATAAGG

dot-bracket secondary structure
....(((((..((((.((((((((((.((((((.((((((((((((.(((((((((.(((..((..(((.((((.....(((..........)))..)))
))))(((.(((((...(((.....)))..))))).)))....((((((.........(((..((((((.(((((...((((((.((.....)).))))))
...))))).(((.(((......))))))))))))..))).....))))))..)))))))).........)))).)).)))))))........))))).))
((((((((...((((.(((.((((..((..........)).))))))).))))))))))))...)))).)))))))))).))))..)))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P42763|ERD14_ARATH: 0.0005

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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