miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST003158
species: Helianthus annuus
miRNA family: MIRf772
source: miRNEST

Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGCTCTCTATGCTTCTGTCA

miRNA*
 ACAGAAGATAGAGAGCACAG

mismatches: 0
bulges: 1
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pre-miRNA
 CGGCCATTAATTAAGAGGAAGAGATTATGATGGATGTTGACAGAAGATAGAGAGCACAGAGAAGCATGAATTGCACATAGATATTGCAATTCACTCCTTC
GTGCTCTCTATGCTTCTGTCATTACCTATTATTTCCTTCTCCCTCTTACTCTAAGAG

dot-bracket secondary structure
...........(((((((.((((...(((((((.((.((((((((((((((((((((.(((.((..(((((((((.........))))))))))).))).
))))))))))).))))))))).)).)))))))....)))).))))))).........


SIMILARITIES
miRBase rco-MIR156h: 0.000000002

PMRD han-miR157a: 2e-43

microPC miR157: 8e-43		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR157 from microPC (MNEST045574)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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