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Species belonging to selected taxon:
Bicyclus anynana
,
Acropora millepora
,
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Danio rerio
,
Ciona intestinalis
,
Rattus norvegicus
,
Drosophila melanogaster
,
Xenopus laevis
,
Oryzias latipes
,
Gallus gallus
,
Salmo salar
,
Caenorhabditis elegans
,
Canis lupus familiaris
,
Ictalurus punctatus
,
Ovis aries
,
Branchiostoma floridae
,
Bombyx mori
,
Aedes aegypti
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Pimephales promelas
,
Aplysia californica
,
Lottia gigantea
,
Gadus morhua
,
Alvinella pompejana
,
Schistosoma mansoni
,
Ixodes scapularis
,
Hydra vulgaris
,
Macaca fascicularis
,
Litopenaeus vannamei
,
Anolis carolinensis
,
Trichosurus vulpecula
,
Papio anubis
,
Paracentrotus lividus
,
Ictalurus furcatus
,
Lepeophtheirus salmonis
,
Homo sapiens
,
Acyrthosiphon pisum
,
Culex quinquefasciatus
,
Saccoglossus kowalevskii
,
Nematostella vectensis
,
Anopheles gambiae
,
Dendroctonus ponderosae
,
Daphnia pulex
,
Nasonia vitripennis
,
Strongylocentrotus purpuratus
,
Petromyzon marinus
,
Drosophila simulans
,
Oreochromis niloticus
,
Molgula tectiformis
,
Schistosoma japonicum
,
Helobdella robusta
,
Petrolisthes cinctipes
,
Taeniopygia guttata
,
Aphis gossypii
,
Clytia hemisphaerica
,
Ciona savignyi
,
Ancylostoma caninum
,
Tetranychus urticae
,
Glossina morsitans morsitans
,
Peromyscus maniculatus bairdii
,
Fundulus heteroclitus
,
Choristoneura fumiferana
,
Sparus aurata
,
Spodoptera frugiperda
,
Halocynthia roretzi
,
Heliothis virescens
,
Crassostrea gigas
,
Patiria pectinifera
,
Ascaris suum
,
Dicentrarchus labrax
,
Biomphalaria glabrata
,
Heterorhabditis bacteriophora
,
Rhipicephalus microplus
,
Brachionus plicatilis
,
Pongo abelii
,
Locusta migratoria
,
Acropora palmata
,
Phlebotomus papatasi
,
Mytilus californianus
,
Anemonia viridis
,
Penaeus monodon
,
Ursus americanus
,
Drosophila sechellia
,
Drosophila auraria
,
Artemia franciscana
,
Pristionchus pacificus
,
Nilaparvata lugens
,
Equus caballus
,
Dissostichus mawsoni
,
Osmerus mordax
,
Euprymna scolopes
,
Pleurobrachia pileus
,
Antheraea assama
,
Drosophila pseudoobscura
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Anoplopoma fimbria
,
Cyprinus carpio
,
Teleopsis dalmanni
,
Montastraea faveolata
,
Lutzomyia longipalpis
,
Caenorhabditis japonica
,
Esox lucius
,
Squalus acanthias
,
Caligus rogercresseyi
,
Leucoraja erinacea
,
Taenia solium
,
Nasonia giraulti
,
Homarus americanus
,
Caenorhabditis brenneri
,
Bombus terrestris
,
Metridium senile
,
Rana catesbeiana
,
Myzus persicae
,
Strongyloides ratti
,
Drosophila willistoni
,
Brugia malayi
,
Takifugu rubripes
,
Cynops pyrrhogaster
,
Trichinella spiralis
,
Meloidogyne hapla
,
Heterodera glycines
,
Eptatretus burgeri
,
Sebastes caurinus
,
Drosophila ananassae
,
Solenopsis invicta
,
Drosophila virilis
,
Drosophila erecta
,
Misgurnus anguillicaudatus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Drosophila grimshawi
,
Ceratitis capitata
,
Hippoglossus hippoglossus
,
Spodoptera littoralis
,
Peregrinus maidis
,
Ambystoma tigrinum tigrinum
,
Meloidogyne incognita
,
Caenorhabditis remanei
,
Samia cynthia ricini
,
Lumbricus rubellus
,
Cavia porcellus
,
Drosophila mojavensis
,
Danaus plexippus
,
Bos indicus
,
Rhipicephalus appendiculatus
,
Cochliomyia hominivorax
,
Rutilus rutilus
,
Anopheles stephensi
,
Diabrotica virgifera virgifera
,
Meleagris gallopavo
,
Trichinella pseudospiralis
,
Tubifex tubifex
,
Haematobia irritans irritans
,
Eriocheir sinensis
,
Papilio xuthus
,
Onychiurus arcticus
,
Lonchura striata domestica
,
Poecilia reticulata
,
Mnemiopsis leidyi
,
Rhodnius prolixus
,
Carcinus maenas
,
Bos sp.
,
Polypedilum vanderplanki
,
Onchocerca volvulus
,
Ostrinia nubilalis
,
Lernaeocera branchialis
,
Macropus eugenii
,
Caligus clemensi
,
Peromyscus polionotus subgriseus
,
Nippostrongylus brasiliensis
,
Laupala kohalensis
,
Oncorhynchus tshawytscha
,
Frankliniella occidentalis
,
Capra hircus
,
Daphnia magna
,
Paralichthys olivaceus
,
Psetta maxima
,
Gammarus pulex
,
Trichoplusia ni
,
Meloidogyne chitwoodi
,
Pan troglodytes verus
,
Spadella cephaloptera
,
Globodera rostochiensis
,
Lymnaea stagnalis
,
Lates calcarifer
,
Porites astreoides
,
Calanus finmarchicus
,
Strongyloides stercoralis
,
Oncorhynchus nerka
,
Gryllus bimaculatus
,
Sebastes rastrelliger
,
Drosophila yakuba
,
Thymallus thymallus
,
Ancylostoma ceylanicum
,
Solea senegalensis
,
Epiphyas postvittana
,
Callinectes sapidus
,
Peripatopsis sedgwicki
,
Fenneropenaeus chinensis
,
Coregonus clupeaformis
,
Aiptasia pallida
,
Torpedo californica
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
,
Schmidtea mediterranea
,
Apis mellifera
,
Tribolium castaneum
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST031839
species:
Mus musculus
miRNA family:
mir-124
source:
miRBase, original name:
mmu-mir-124-2
(
MI0000717
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAGGCACGCGGTGAATGCC
miRNA*
TGTTCACAGCGGACCTTGAT
mismatches:
4
bulges:
0
View larger
pre-miRNA
ATCAAGATCAGAGACTCTGCTCTCCG
TGTTCACAGCGGACCTTGAT
TTAATGTCATACAAT
TAAGGCACGCGGTGAATGCC
AAGAGCGGAGCCTACGGCT
GCACTTGAA
dot-bracket secondary structure
.(((((..(((((.(((((((((..(
(((((((.(((..(((((((
(...........)))
)))))..))).)))))))).
.))))))))).))....))
)..))))).
SIMILARITIES
miRBase
rno-mir-124-2
:
3e-57
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-124: 2e-36
Identical with:
eca-mir-124-2
from miRBase (
MNEST027008
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned, Solexa
references
[
1
] Houbaviy HB, Murray MF, Sharp PA,
Dev Cell. 5:351-358(2003).
,
"Embryonic stem cell-specific MicroRNAs"
[
2
] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP,
Genes Dev. 24:992-1009(2010).
,
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[
3
] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M,
Cell. 129:1401-1414(2007).
,
"A mammalian microRNA expression atlas based on small RNA library sequencing"
[
4
] Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T,
Curr Biol. 12:735-739(2002).
,
"Identification of tissue-specific microRNAs from mouse"
[
5
] Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M,
Nature. 432:226-230(2004).
,
"A pancreatic islet-specific microRNA regulates insulin secretion"
[
6
] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A,
Mol Hum Reprod. 16:463-471(2010).
,
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"