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Species belonging to selected taxon:
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Rattus norvegicus
,
Gallus gallus
,
Canis lupus familiaris
,
Ovis aries
,
Macaca fascicularis
,
Anolis carolinensis
,
Trichosurus vulpecula
,
Papio anubis
,
Homo sapiens
,
Taeniopygia guttata
,
Peromyscus maniculatus bairdii
,
Pongo abelii
,
Ursus americanus
,
Equus caballus
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Cavia porcellus
,
Bos indicus
,
Meleagris gallopavo
,
Lonchura striata domestica
,
Bos sp.
,
Macropus eugenii
,
Peromyscus polionotus subgriseus
,
Capra hircus
,
Pan troglodytes verus
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST031855
species:
Mus musculus
miRNA family:
mir-129
source:
miRBase, original name:
mmu-mir-129-2
(
MI0000585
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGCCCTTACCCCAAAAAGCAT
miRNA*
CTTTTTGCGGTCTGGGCTTGC
mismatches:
3
bulges:
1
View larger
pre-miRNA
TGCCTTTCGCGAAT
CTTTTTGCGGTCTGGGCTTGC
TGTACATAACTCAATAGCCGG
AAGCCCTTACCCCAAAAAGCAT
TCGCGGAGGGCG
dot-bracket secondary structure
.(((((((((((((
(((((((.(((..((((((((
(((..........)))))...
))))))..))).))))))).))
))))))))))).
SIMILARITIES
miRBase
mmu-mir-129-2
:
4e-46
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-129: 4e-28
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned, Solexa
deep sequencing data evidence
references
[
1
] Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T,
RNA. 9:175-179(2003).
,
"New microRNAs from mouse and human"
[
2
] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP,
Genes Dev. 24:992-1009(2010).
,
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[
3
] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M,
Cell. 129:1401-1414(2007).
,
"A mammalian microRNA expression atlas based on small RNA library sequencing"
[
4
] Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T,
Curr Biol. 12:735-739(2002).
,
"Identification of tissue-specific microRNAs from mouse"
[
5
] Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M,
Nature. 432:226-230(2004).
,
"A pancreatic islet-specific microRNA regulates insulin secretion"
[
6
] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A,
Mol Hum Reprod. 16:463-471(2010).
,
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"