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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000320
species: Brassica oleracea var. alboglabra
miRNA family: MIRf118
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGGACCCGGATACGGATCCGA

miRNA*
 GGGCTGGGATCCGGGTATGGG

mismatches: 2
bulges: 2
View larger
pre-miRNA
 GACCAAACACCCGGACCCGGATACGGATCCGATCCGGATGCTGTACGGGTTACCGATCGGAGACCAAGACGTGAAAGGTATGGAGATGGGTGGTGGTGGG
AGTTTTAGCTCGCTTTTGGCGTCGAATATGCAGTTGGGTCTTGGTGGGATCATCCTAGACGGGTCGGGCTGGGATCCGGGTATGGGACTAAAGA

dot-bracket secondary structure
.........((((.((((((((.(((.(((((((((....(((..(((....)))..)))..((((((((.(((...(((((..((((..(((.((((((
........)))))).))).))))...)))))..))).))))))))((((...))))...))))))))))))..)))))))).))))........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q94AR6|DOF31_ARATH: 0.00000000008

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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