ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-343
source: miRBase, original name: mmu-mir-343 (MI0005494)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCCCTTCATGTGCCCAGA miRNA* GAGTGGGTGTGGCGGGGGTAGCAGAGCCCAGG mismatches: 2 bulges: 13 |
pre-miRNA
TGGGATAGAGTGGGTGTGGCGGGGGTAGCAGAGCCCAGGGCAACCTCTCCCTTCATGTGCCCAGATCCTGCATGC
dot-bracket secondary structure
.(((((....(((((((((.(((((...........(((....)))))))).))))..))))).)))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"
TGGGATAGAGTGGGTGTGGCGGGGGTAGCAGAGCCCAGGGCAACCTCTCCCTTCATGTGCCCAGATCCTGCATGC
dot-bracket secondary structure
.(((((....(((((((((.(((((...........(((....)))))))).))))..))))).)))))......
SIMILARITIES| miRBase rno-mir-343: 1e-24 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"
