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Species belonging to selected taxon:
Bicyclus anynana
,
Mus musculus
,
Sus scrofa
,
Bos taurus
,
Danio rerio
,
Ciona intestinalis
,
Rattus norvegicus
,
Drosophila melanogaster
,
Xenopus laevis
,
Oryzias latipes
,
Gallus gallus
,
Salmo salar
,
Canis lupus familiaris
,
Ictalurus punctatus
,
Ovis aries
,
Branchiostoma floridae
,
Bombyx mori
,
Aedes aegypti
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Pimephales promelas
,
Aplysia californica
,
Lottia gigantea
,
Gadus morhua
,
Alvinella pompejana
,
Ixodes scapularis
,
Macaca fascicularis
,
Litopenaeus vannamei
,
Anolis carolinensis
,
Trichosurus vulpecula
,
Papio anubis
,
Paracentrotus lividus
,
Ictalurus furcatus
,
Lepeophtheirus salmonis
,
Homo sapiens
,
Acyrthosiphon pisum
,
Culex quinquefasciatus
,
Saccoglossus kowalevskii
,
Anopheles gambiae
,
Dendroctonus ponderosae
,
Daphnia pulex
,
Nasonia vitripennis
,
Strongylocentrotus purpuratus
,
Petromyzon marinus
,
Drosophila simulans
,
Oreochromis niloticus
,
Molgula tectiformis
,
Helobdella robusta
,
Petrolisthes cinctipes
,
Taeniopygia guttata
,
Aphis gossypii
,
Ciona savignyi
,
Tetranychus urticae
,
Glossina morsitans morsitans
,
Peromyscus maniculatus bairdii
,
Fundulus heteroclitus
,
Choristoneura fumiferana
,
Sparus aurata
,
Spodoptera frugiperda
,
Halocynthia roretzi
,
Heliothis virescens
,
Crassostrea gigas
,
Patiria pectinifera
,
Dicentrarchus labrax
,
Biomphalaria glabrata
,
Rhipicephalus microplus
,
Pongo abelii
,
Locusta migratoria
,
Phlebotomus papatasi
,
Mytilus californianus
,
Penaeus monodon
,
Ursus americanus
,
Drosophila sechellia
,
Drosophila auraria
,
Artemia franciscana
,
Nilaparvata lugens
,
Equus caballus
,
Dissostichus mawsoni
,
Osmerus mordax
,
Euprymna scolopes
,
Antheraea assama
,
Drosophila pseudoobscura
,
Oryctolagus cuniculus
,
Macaca nemestrina
,
Anoplopoma fimbria
,
Cyprinus carpio
,
Teleopsis dalmanni
,
Lutzomyia longipalpis
,
Esox lucius
,
Squalus acanthias
,
Caligus rogercresseyi
,
Leucoraja erinacea
,
Nasonia giraulti
,
Homarus americanus
,
Bombus terrestris
,
Rana catesbeiana
,
Myzus persicae
,
Drosophila willistoni
,
Takifugu rubripes
,
Cynops pyrrhogaster
,
Eptatretus burgeri
,
Sebastes caurinus
,
Drosophila ananassae
,
Solenopsis invicta
,
Drosophila virilis
,
Drosophila erecta
,
Misgurnus anguillicaudatus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Drosophila grimshawi
,
Ceratitis capitata
,
Hippoglossus hippoglossus
,
Spodoptera littoralis
,
Peregrinus maidis
,
Ambystoma tigrinum tigrinum
,
Samia cynthia ricini
,
Lumbricus rubellus
,
Cavia porcellus
,
Drosophila mojavensis
,
Danaus plexippus
,
Bos indicus
,
Rhipicephalus appendiculatus
,
Cochliomyia hominivorax
,
Rutilus rutilus
,
Anopheles stephensi
,
Diabrotica virgifera virgifera
,
Meleagris gallopavo
,
Tubifex tubifex
,
Haematobia irritans irritans
,
Eriocheir sinensis
,
Papilio xuthus
,
Onychiurus arcticus
,
Lonchura striata domestica
,
Poecilia reticulata
,
Rhodnius prolixus
,
Carcinus maenas
,
Bos sp.
,
Polypedilum vanderplanki
,
Ostrinia nubilalis
,
Lernaeocera branchialis
,
Macropus eugenii
,
Caligus clemensi
,
Peromyscus polionotus subgriseus
,
Laupala kohalensis
,
Oncorhynchus tshawytscha
,
Frankliniella occidentalis
,
Capra hircus
,
Daphnia magna
,
Paralichthys olivaceus
,
Psetta maxima
,
Gammarus pulex
,
Trichoplusia ni
,
Pan troglodytes verus
,
Spadella cephaloptera
,
Lymnaea stagnalis
,
Lates calcarifer
,
Calanus finmarchicus
,
Oncorhynchus nerka
,
Gryllus bimaculatus
,
Sebastes rastrelliger
,
Drosophila yakuba
,
Thymallus thymallus
,
Solea senegalensis
,
Epiphyas postvittana
,
Callinectes sapidus
,
Peripatopsis sedgwicki
,
Fenneropenaeus chinensis
,
Coregonus clupeaformis
,
Torpedo californica
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
,
Apis mellifera
,
Tribolium castaneum
,
Macaca mulatta
ABOUT THIS RECORD
ID:
MNEST032075
species:
Mus musculus
miRNA family:
mir-448
source:
miRBase, original name:
mmu-mir-448
(
MI0001638
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GAACATCCTGCATAGTGCTGCC
miRNA*
TTGCATATGTAGGATGTCCCA
mismatches:
2
bulges:
1
View larger
pre-miRNA
ACGAGGAGGTT
GAACATCCTGCATAGTGCTGCC
AGGAAATCCCTACTTCATACTAAGAGGGGGCTGGCTGG
TTGCATATGTAGGATGTCCCA
TCTCCTGG
CCCACTTCGTCA
dot-bracket secondary structure
.(.(((((((.
(.((((((((((((.(((.(((
((..(..((((.(((......))).))))..)..))))
).))))))))))))))).).)
)))))).)
............
SIMILARITIES
miRBase
mmu-mir-448
:
4e-59
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-448: 2e-40
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP,
Genes Dev. 24:992-1009(2010).
,
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[
2
] Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M,
Nature. 434:338-345(2005).
,
"Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals"
[
3
] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A,
Mol Hum Reprod. 16:463-471(2010).
,
"MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"