ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-449
source: miRBase, original name: mmu-mir-449b (MI0005547)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCAGTGTTGTTAGCTGGC miRNA* CACAGCTACCCTGCCACT mismatches: 3 bulges: 2 |
pre-miRNA
AGACTCGGGTAGGCAGTGTTGTTAGCTGGCTGCGTTGGGTCAGGCCAGCAGCCACAGCTACCCTGCCACTTCCTTCTGGC
dot-bracket secondary structure
(((...((((.(((((.((.(((.(.(((((((....((.....)).))))))))))).)).)))))))))...)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"
AGACTCGGGTAGGCAGTGTTGTTAGCTGGCTGCGTTGGGTCAGGCCAGCAGCCACAGCTACCCTGCCACTTCCTTCTGGC
dot-bracket secondary structure
(((...((((.(((((.((.(((.(.(((((((....((.....)).))))))))))).)).)))))))))...)))...
SIMILARITIES| miRBase hsa-mir-449b: 0.000000000000001 PMRD no hits microPC no hits | UniProt no hits RFAM mir-449: 6e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M, Cell. 129:1401-1414(2007)., "A mammalian microRNA expression atlas based on small RNA library sequencing"
