ABOUT THIS RECORDspecies: Brassica oleracea var. alboglabra
miRNA family: MIRf427
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGAGCAAGAGCAGCTGCTTT miRNA* AGCCGTGGCTCTTGTCCTCCC mismatches: 3 bulges: 0 |
pre-miRNA
TGCAAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTAAACATCGTTCCAACATCAACAGGAGCAGCTAAAGCCGTGGCTCTTGTCCTCCCTAAC
CTCAAAGGAAAGCT
dot-bracket secondary structure
....(((..((.(((..((.((((.((((((((.((.((((((......(((((..........)))))...)))))).)).)))))))).)))).))..
.)))..))...)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCAAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTAAACATCGTTCCAACATCAACAGGAGCAGCTAAAGCCGTGGCTCTTGTCCTCCCTAAC
CTCAAAGGAAAGCT
dot-bracket secondary structure
....(((..((.(((..((.((((.((((((((.((.((((((......(((((..........)))))...)))))).)).)))))))).)))).))..
.)))..))...)))
SIMILARITIES| miRBase no hits PMRD ath-miRf10919-akr: 5e-28 microPC no hits | UniProt sp|P19866|G3PA_SPIOL: 0.000008 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
