miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000322
species: Brassica oleracea var. alboglabra
miRNA family: MIRf427
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAGAGCAAGAGCAGCTGCTTT

miRNA*
 AGCCGTGGCTCTTGTCCTCCC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TGCAAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTAAACATCGTTCCAACATCAACAGGAGCAGCTAAAGCCGTGGCTCTTGTCCTCCCTAAC
CTCAAAGGAAAGCT

dot-bracket secondary structure
....(((..((.(((..((.((((.((((((((.((.((((((......(((((..........)))))...)))))).)).)))))))).)))).))..
.)))..))...)))


SIMILARITIES
miRBase no hits

PMRD ath-miRf10919-akr: 5e-28

microPC no hits		UniProt sp|P19866|G3PA_SPIOL: 0.000008

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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