ABOUT THIS RECORDspecies: Mus musculus
source: miRBase, original name: mmu-mir-546 (MI0003517)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGTGGCACGGAGTC miRNA* CTCTTGCTATCCCTGTGC mismatches: 1 bulges: 4 |
pre-miRNA
CCTCTCTTCCCAAAACTAAACAGGATCTATCATGGTGGCACGGAGTCAGCTAGATGTTGTCTCTTGCTATCCCTGTGCTAGTTCCATGTTTTAGAAGCAA
AGTGATACTGGGGAGGAGAGG
dot-bracket secondary structure
(((((((((((....((((((((((.(((.((((((((((.((((.((((.....)))).)))))))))))...))).))).))).)).)))))......
((.....)).)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
references
[1] Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M, BMC Bioinformatics. 6:267(2005)., "Identification of clustered microRNAs using an ab initio prediction method"
[2] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
CCTCTCTTCCCAAAACTAAACAGGATCTATCATGGTGGCACGGAGTCAGCTAGATGTTGTCTCTTGCTATCCCTGTGCTAGTTCCATGTTTTAGAAGCAA
AGTGATACTGGGGAGGAGAGG
dot-bracket secondary structure
(((((((((((....((((((((((.(((.((((((((((.((((.((((.....)))).)))))))))))...))).))).))).)).)))))......
((.....)).)))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Solexa
references
[1] Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M, BMC Bioinformatics. 6:267(2005)., "Identification of clustered microRNAs using an ab initio prediction method"
[2] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
