miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Macaca fascicularis, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Peromyscus polionotus subgriseus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST032252
species: Mus musculus
miRNA family: mir-467
source: miRBase, original name: mmu-mir-669a-6 (MI0014058)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGTTGTGTGTGCATGTTCATGTCT

miRNA*
ACATAACATACACACACACGTAT

mismatches: 4
bulges: 1

View larger
pre-miRNA
TGTGCATGTGTGTATAGTTGTGTGTGCATGTTCATGTCTATATTTGAATATACATAACATACACACACACGTATAAACGCAAGCACA

dot-bracket secondary structure
.((((.(((((.((((..((((((((.(((((.((((.(((......))).))))))))).))))))))..)))).))))).)))).


SIMILARITIES
miRBase mmu-mir-669a-1: 3e-44

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: mmu-mir-669a-12 from miRBase (MNEST032242)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP, Genes Dev. 24:992-1009(2010)., "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"




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