ABOUT THIS RECORDspecies: Mus musculus
miRNA family: miR-1186
source: miRBase, original name: mmu-mir-1186 (MI0006284)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGTGCTGGAATTAAAGGCATG miRNA* CTGCCCGGCAGGTTCTGTTATTTCT mismatches: 5 bulges: 3 |
pre-miRNA
TCCACCTGTCTCTGCCTCCCGAGTGCTGGAATTAAAGGCATGCACCACCACTGCCCGGCAGGTTCTGTTATTTCTGAGTGTGAGAAATATATGGGGAAAA
GTCTTCATGGTGAGTCCAAAGG
dot-bracket secondary structure
..((((..((((.(((((..(((((..((((((...((((((......)).)))).....))))))..)))))..))).)))))).....(((((((...
.)))))))))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Calabrese JM, Seila AC, Yeo GW, Sharp PA, Proc Natl Acad Sci U S A. 104:18097-18102(2007)., "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells"
[2] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
TCCACCTGTCTCTGCCTCCCGAGTGCTGGAATTAAAGGCATGCACCACCACTGCCCGGCAGGTTCTGTTATTTCTGAGTGTGAGAAATATATGGGGAAAA
GTCTTCATGGTGAGTCCAAAGG
dot-bracket secondary structure
..((((..((((.(((((..(((((..((((((...((((((......)).)))).....))))))..)))))..))).)))))).....(((((((...
.)))))))))))..........
SIMILARITIES| miRBase mmu-mir-3470b: 0.0000000001 PMRD no hits microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.000007 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
references
[1] Calabrese JM, Seila AC, Yeo GW, Sharp PA, Proc Natl Acad Sci U S A. 104:18097-18102(2007)., "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells"
[2] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
