ABOUT THIS RECORDspecies: Mus musculus
miRNA family: miR-1191
source: miRBase, original name: mmu-mir-1191 (MI0006296)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGTCTTACTATGTAGCCCTA miRNA* GGGCTACATAGTGAGAACCTGCC mismatches: 1 bulges: 2 |
pre-miRNA
TGGAACCAGCCTGGTCTACATAGCAACATCTAAGCCAGCCAGGGCTACATAGTGAGAACCTGCCTCAAAAGCAAAACAGCAGTCTTACTATGTAGCCCTA
GATGGCCTAGAACTCCCTAT
dot-bracket secondary structure
((((.((.....)))))).((((.....((((.((((.(.(((((((((((((((((..((((...............))))))))))))))))))))).
).)))).)))).....))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Calabrese JM, Seila AC, Yeo GW, Sharp PA, Proc Natl Acad Sci U S A. 104:18097-18102(2007)., "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells"
[2] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
TGGAACCAGCCTGGTCTACATAGCAACATCTAAGCCAGCCAGGGCTACATAGTGAGAACCTGCCTCAAAAGCAAAACAGCAGTCTTACTATGTAGCCCTA
GATGGCCTAGAACTCCCTAT
dot-bracket secondary structure
((((.((.....)))))).((((.....((((.((((.(.(((((((((((((((((..((((...............))))))))))))))))))))).
).)))).)))).....))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Solexa
deep sequencing data evidence
references
[1] Calabrese JM, Seila AC, Yeo GW, Sharp PA, Proc Natl Acad Sci U S A. 104:18097-18102(2007)., "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells"
[2] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
