ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-1195
source: miRBase, original name: mmu-mir-1195 (MI0006303)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGTTCGAGGCCAGCCTGCTCA miRNA* AGTTCTAGGGCAGCCAGGAACACACA mismatches: 4 bulges: 5 |
pre-miRNA
TAGAGGCAGGCAGATCTCTGTGAGTTCGAGGCCAGCCTGCTCAACAGAATGAGTTCTAGGGCAGCCAGGAACACACAGAGAAACCCTGTCTCAAGAAGGT
AAAAAGTAAAAAAAAAAAAAAAA
dot-bracket secondary structure
..((((((((....((((((((.((((..(((..(((((((((......)))))....)))).)))..)))).))))))))...))))))))........
.......................
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Calabrese JM, Seila AC, Yeo GW, Sharp PA, Proc Natl Acad Sci U S A. 104:18097-18102(2007)., "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells"
TAGAGGCAGGCAGATCTCTGTGAGTTCGAGGCCAGCCTGCTCAACAGAATGAGTTCTAGGGCAGCCAGGAACACACAGAGAAACCCTGTCTCAAGAAGGT
AAAAAGTAAAAAAAAAAAAAAAA
dot-bracket secondary structure
..((((((((....((((((((.((((..(((..(((((((((......)))))....)))).)))..)))).))))))))...))))))))........
.......................
SIMILARITIES| miRBase mmu-mir-3470a: 0.00002 PMRD no hits microPC no hits | UniProt no hits RFAM 7SK: 0.000007 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Calabrese JM, Seila AC, Yeo GW, Sharp PA, Proc Natl Acad Sci U S A. 104:18097-18102(2007)., "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells"
