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Species belonging to selected taxon:
Mus musculus
,
Rattus norvegicus
,
Peromyscus maniculatus bairdii
,
Peromyscus polionotus subgriseus
ABOUT THIS RECORD
ID:
MNEST032403
species:
Mus musculus
miRNA family:
mir-1306
source:
miRBase, original name:
mmu-mir-1306
(
MI0009935
)
Taxonomy by NCBI:
Mus musculus
Mus
Mus
Murinae
Muridae
Muroidea
Sciurognathi
Rodentia
Glires
Euarchontoglires
Eutheria
Theria
Mammalia
Amniota
Tetrapoda
Sarcopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CACCACCTCCCCTGCAAACGTCC
miRNA*
ACGTTGGCTCTGGTGGTGAT
mismatches:
4
bulges:
3
View larger
pre-miRNA
CAGTCTC
CACCACCTCCCCTGCAAACGTCC
AGTGATGCAGAGGTAATGG
ACGTTGGCTCTGGTGGTGAT
GGACAGTCCG
dot-bracket secondary structure
..((((.
(((((((......((.(((((((
(....(((....))).)))
))))).))...)))))))..
))))......
SIMILARITIES
miRBase
mmu-mir-1306
:
1e-39
PMRD
no hits
microPC
no hits
UniProt
sp|Q9EQM6|DGCR8_MOUSE: 0.00000004
RFAM
mir-1306: 1e-33
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Solexa
references
[
1
] Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER,
Genome Res. 20:1590-1604(2010).
,
"Next-generation sequencing identifies the natural killer cell microRNA transcriptome"
[
2
] Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP,
Genes Dev. 24:992-1009(2010).
,
"Mammalian microRNAs: experimental evaluation of novel and previously annotated genes"
[
3
] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK,
Genome Res. 18:1787-1797(2008).
,
"In-depth characterization of the microRNA transcriptome in a leukemia progression model"