ABOUT THIS RECORDspecies: Mus musculus
source: miRBase, original name: mmu-mir-1896 (MI0008322)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCTCTGATGGTGGGTGAGGAG miRNA* ACACTCATTACAGTGATGTC mismatches: 3 bulges: 3 |
pre-miRNA
AAGGCTTTCCCACACTCATTACAGTGATGTCTTTTGGAACGACCATGGACTCTCTGATGGTGGGTGAGGAGGAGGGCCCGA
dot-bracket secondary structure
..(((((((((.((((((((((((.((.((((..(((.....))).)))))).))).)))))))))..).))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR
references
[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"
AAGGCTTTCCCACACTCATTACAGTGATGTCTTTTGGAACGACCATGGACTCTCTGATGGTGGGTGAGGAGGAGGGCCCGA
dot-bracket secondary structure
..(((((((((.((((((((((((.((.((((..(((.....))).)))))).))).)))))))))..).))))))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q5RJ54|ZN187_MOUSE: 0.000000001 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR
references
[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"
