ABOUT THIS RECORDspecies: Mus musculus
source: miRBase, original name: mmu-mir-1897 (MI0008314)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTGGATGGAGAAAGAGGGGG miRNA* TCAACTCGTTCTGTCCGGTGAG mismatches: 5 bulges: 0 |
pre-miRNA
ATTCTCCGTGCTTTGGATGGAGAAAGAGGGGGGAAGTGCGAGCTCCTTCAACTCGTTCTGTCCGGTGAGGAGTGATCCA
dot-bracket secondary structure
...((((...(.((((((((((..((..((((((.((....))))))))..))..)))))))))).).)))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR
references
[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"
ATTCTCCGTGCTTTGGATGGAGAAAGAGGGGGGAAGTGCGAGCTCCTTCAACTCGTTCTGTCCGGTGAGGAGTGATCCA
dot-bracket secondary structure
...((((...(.((((((((((..((..((((((.((....))))))))..))..)))))))))).).)))).......
SIMILARITIES| miRBase mmu-mir-1897: 1e-39 PMRD no hits microPC no hits | UniProt no hits RFAM SOX2OT_exon3: 2e-38 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR
references
[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"
