ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-1898
source: miRBase, original name: mmu-mir-1898 (MI0008324)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTCAAGGTTCACAGGGGATC miRNA* ATAATCTGTTTACTTTGACCTAA mismatches: 4 bulges: 1 |
pre-miRNA
GTATGAACATAGGTCAAGGTTCACAGGGGATCAAGAAATATTATTCTTGTATAATCTGTTTACTTTGACCTAAATACTAGCTT
dot-bracket secondary structure
((((.....(((((((((((..(((((..((((((((......)))))).))..)))))..))))))))))).))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR
references
[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"
GTATGAACATAGGTCAAGGTTCACAGGGGATCAAGAAATATTATTCTTGTATAATCTGTTTACTTTGACCTAAATACTAGCTT
dot-bracket secondary structure
((((.....(((((((((((..(((((..((((((((......)))))).))..)))))..))))))))))).))))......
SIMILARITIES| miRBase eca-mir-1898: 8e-29 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: eca-mir-1898 from miRBase (MNEST027312) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR
references
[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"
