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Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Peromyscus maniculatus bairdii, Peromyscus polionotus subgriseus



ABOUT THIS RECORD

ID: MNEST032427
species: Mus musculus
miRNA family: mir-1906
source: miRBase, original name: mmu-mir-1906-1 (MI0008321)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCAGCAGCCTGAGGCAGGGCT

miRNA*
CCTGAGGCAGGGCTGGGCAGA

mismatches: 7
bulges: 1

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pre-miRNA
GGACATTAGGAGCAACCTCCTAGGGTTGTTGTGAGAATTAAATGAACTGCAGCAGCCTGAGGCAGGGCTGGGCAGAGACC

dot-bracket secondary structure
.(((.(((((((....))))))).)))...................((((..((((((......)))))).)))).....


SIMILARITIES
miRBase mmu-mir-1906-2: 4e-40

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: mmu-mir-1906-2 from miRBase (MNEST032428)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: microarray, PCR

references

[1] He S, Su H, Liu C, Skogerbo G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R, BMC Genomics. 9:236(2008)., "MicroRNA-encoding long non-coding RNAs"




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