miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus



ABOUT THIS RECORD

ID: MNEST032457
species: Mus musculus
source: miRBase, original name: mmu-mir-1953 (MI0009948)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGGAAAGTTCTCAGGCTTCTG

miRNA*
GAAGGCTGTGAGGTTCCCCTCT

mismatches: 5
bulges: 0

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pre-miRNA
GGTGCTGCCTGGTCTTGGGAAAGTTCTCAGGCTTCTGAGAATTTGCAGGAGCAGAAGGCTGTGAGGTTCCCCTCTTCCTGGCAGCCCTA

dot-bracket secondary structure
((.((((((.((....(((.((.(((.(((.((((((....((.....)).)))))).))).))).)).)))....)).))))))))..


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK, Genome Res. 18:1787-1797(2008)., "In-depth characterization of the microRNA transcriptome in a leukemia progression model"




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