ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-1954
source: miRBase, original name: mmu-mir-1954 (MI0009949)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTGCAGAGTGAGACCCTGTT miRNA* CGGGGTTTCTCTGTGTAGCCC mismatches: 3 bulges: 0 |
pre-miRNA
GAGGTCAGCCAGAACTGCAGAGTGAGACCCTGTTGTTTGTTTGTTTGTTTGAGACGGGGTTTCTCTGTGTAGCCCTGGCTATCCTA
dot-bracket secondary structure
.(((..((((((..(((((.((.(((((((((((..................))))))))))).)).)))))..))))))..))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK, Genome Res. 18:1787-1797(2008)., "In-depth characterization of the microRNA transcriptome in a leukemia progression model"
GAGGTCAGCCAGAACTGCAGAGTGAGACCCTGTTGTTTGTTTGTTTGTTTGAGACGGGGTTTCTCTGTGTAGCCCTGGCTATCCTA
dot-bracket secondary structure
.(((..((((((..(((((.((.(((((((((((..................))))))))))).)).)))))..))))))..))).
SIMILARITIES| miRBase mmu-mir-5098: 0.000000001 PMRD no hits microPC no hits | UniProt no hits RFAM 7SK: 0.000001 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, Marra MA, Humphries RK, Genome Res. 18:1787-1797(2008)., "In-depth characterization of the microRNA transcriptome in a leukemia progression model"
